生物医学文献引文在线集成检索整合平台的构建

为解决各引文数据库的检索方法、检索结果展示方式不一、引文著录不规范等问题,解放军医学图书馆采用 NET 框架作为系统的开发平台,采用 C/S 结构模式,在生物医学引文数据库的基础上构建生物医学文献引文集成检索整合平台,实现了统一平台一站式检索、自动去重、自动分组和便捷输出规范的引文报告等个性化功能,提高了生物医学文献查引效率。     

Tasks, topics and relevance judging for the TREC Genomics Track: five years of experience evaluating biomedical text information retrieval systems

With the help of a team of expert biologist judges, the TREC Genomics track has generated four large sets of “gold standard” test collections, comprised of over a hundred unique topics, two kinds of ad hoc retrieval tasks, and their corresponding relevance judgments. Over the years of the track, increasingly complex tasks necessitated the creation of judging tools and training guidelines to accommodate teams of part-time short-term workers from a variety of specialized biological scientific backgrounds, and to address consistency and reproducibility of the assessment process. Important lessons were learned about factors that influenced the utility of the test collections including topic design, annotations provided by judges, methods used for identifying and training judges, and providing a central moderator “meta-judge”.     

数据挖掘在生物医学工程文献检索中的应用

本文在概述数据挖掘技术的基本概念、分析方法的基础上,分析与比较了文本自动聚类算法;综述了国内外面向MEDLINE文献数据库的数据挖掘、知识提取研究;简述了可扩展标识语言(XML)的基本概念、文档格式及其在数据管理及数据挖掘中的应用.     

Fusing different information retrieval systems according to query-topics: a study based on correlation in information retrieval systems and TREC topics

To evaluate Information Retrieval Systems on their effectiveness, evaluation programs such as TREC offer a rigorous methodology as well as benchmark collections. Whatever the evaluation collection used, effectiveness is generally considered globally, averaging the results over a set of information needs. As a result, the variability of system performance is hidden as the similarities and differences from one system to another are averaged. Moreover, the topics on which a given system succeeds or fails are left unknown. In this paper we propose an approach based on data analysis methods (correspondence analysis and clustering) to discover correlations between systems and to find trends in topic/system correlations. We show that it is possible to cluster topics and systems according to system performance on these topics, some system clusters being better on some topics. Finally, we propose a new method to consider complementary systems as based on their performances which can be applied for example in the case of repeated queries. We consider the system profile based on the similarity of the set of TREC topics on which systems achieve similar levels of performance. We show that this method is effective when using the TREC ad hoc collection.     

Preservation of the biomedical literature: an overview

The National Library of Medicine began to preserve its collection many years ago. This article presents a brief review of NLM's early conservation and microfilming programs, and describes the current activities of the library's new Preservation Section. Also mentioned are the complementary efforts of NLM staff who are involved in research into electronic imaging and the campaign to increase the use of alkaline paper in medical and scientific publishing. Goals of the National Preservation Plan for the Biomedical Literature are summarized and a report on progress in implementing the plan is provided. Results of the preservation needs assessment described in the accompanying article by Kirkpatrick are briefly analyzed. Recent efforts of the Commission on Preservation and Access, the National Endowment for the Humanities, the Research Libraries Group, and several international associations are described in terms of their potential benefit to preservation of the biomedical literature. The need to monitor new preservation technologies and preserve materials in audiovisual and electronic formats is emphasized. It is argued that with enough coordination, cooperation, and willingness among health sciences libraries to share the costs, the goal of preserving all of the important biomedical literature can be accomplished.     

The scientific and clinical literature of AIDS: development,bibliographic control and retrieval

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Performance of conceptual framework elements for the retrieval of qualitative health literature: a case study

Objective:A growing volume of studies address methods for performing systematic reviews of qualitative studies. One such methodological aspect is the conceptual framework used to structure the review question and plan the search strategy for locating relevant studies. The purpose of this case study was to evaluate the retrieval potential of each element of conceptual frameworks in qualitative systematic reviews in the health sciences.Methods:The presence of elements from conceptual frameworks in publication titles, abstracts, and controlled vocabulary in CINAHL and PubMed was analyzed using a set of qualitative reviews and their included studies as a gold standard. Using a sample of 101 publications, we determined whether particular publications could be retrieved if a specific element from the conceptual framework was used in the search strategy.Results:We found that the relative recall of conceptual framework elements varied considerably, with higher recall for patient/population (99%) and research type (97%) and lower recall for intervention/phenomenon of interest (74%), outcome (79%), and context (61%).Conclusion:The use of patient/population and research type elements had high relative recall for qualitative studies. However, other elements should be used with great care due to lower relative recall.     

Problem-based learning and libraries: a survey of the literature

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Emerging roles for biomedical librarians: a survey of current practice,challenges, and changes

Objective:

This study is intended to (1) identify emerging roles for biomedical librarians and determine how common these roles are in a variety of library settings, (2) identify barriers to taking on new roles, and (3) determine how librarians are developing the capacity to take on new roles.

Methods:

A survey was conducted of librarians in biomedical settings.

Results:

Most biomedical librarians are taking on new roles. The most common roles selected by survey respondents include analysis and enhancement of user experiences, support for social media, support for systematic reviews, clinical informationist, help for faculty or staff with authorship issues, and implementation of researcher profiling and collaboration tools. Respondents in academic settings are more likely to report new roles than hospital librarians are, but some new roles are common in both settings. Respondents use a variety of methods to free up time for new roles, but predominant methods vary between directors and librarians and between academic and hospital respondents. Lack of time is the biggest barrier that librarians face when trying to adopt new roles. New roles are associated with increased collaboration with individuals and/or groups outside the library.

Conclusion and Implications:

This survey documents the widespread incorporation of new roles in biomedical libraries in the United States, as well as the barriers to adopting these roles and the means by which librarians are making time for them. The results of the survey can be used to inform strategic planning, succession planning, library education, and career development for biomedical librarians.     

The long tail: a usage analysis of pre-1993 print biomedical journal literature

Objective: The research analyzes usage of a major biomedical library''s pre-1993 print journal collection.Methodology: In July 2003, in preparation for a renovation and expansion project, the Biomedical Library at the University of California, San Diego, moved all of its pre-1993 journal volumes off-site, with the exception of twenty-two heavily used titles. Patrons wishing to consult one of these stored volumes could request that it be delivered to the library for their use. In the spring of 2006, an analysis was made of these requests.Results: By July of 2006, 79,827 journal volumes published in 1992 or earlier had been requested from storage. The number of requests received declined with age of publication. The usage distribution exhibited a “long tail”: 50% of the 79,827 requests were for journal volumes published before 1986. The availability of electronic access dramatically reduced the chance that corresponding print journal volumes would be requested.Conclusions: The older biomedical print journal literature appears to be of continued value to the biomedical research community. When electronic access was provided to the older literature, demand for older print volumes declined dramatically.

Highlights

• Analysis of requests for stored biomedical journal volumes published prior to 1993 indicates that older biomedical journal literature receives substantial use: during this 3-year study, there were nearly 80,000 requests for journal volumes published in 1992 or earlier, with half the requests for volumes published from 1986–1992 and 40% of the request for volumes published from 1970–1985. These results indicate that retaining older print volumes, or providing easy access to the older literature through electronic journals or other means, will likely be required to meet user information needs.
• Use of older journal volumes varies by title and by user population, and a small number of journal titles were responsible for most of the use.
• Requests for older print biomedical journal titles dropped significantly when electronic access became available.

Implications

• Biomedical libraries should carefully consider implications of eliminating on-site access to older journal literature for users and budgets.
• Removing access to older journal literature may result in higher demand for interlibrary loan and document delivery services.
• Biomedical libraries can safely substitute reliable electronic access to older literature to meet ongoing needs for this information, thereby creating space for other purposes.

     

The status and development of online information retrieval in the biomedical field in Czechoslovakia

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The use of grey literature in health sciences: a preliminary survey

The paper describes some initiatives in the field of grey literature (GL) and the activities, from 1985, of the Italian Library Association Study Group. The major categories of GL are defined; a survey that evaluates the use of GL by end users in the health sciences is described. References in selected periodicals and databases have been analyzed for the years 1987-1988 to determine the number of articles citing GL, the number of GL citations found in selected periodicals, the various types of GL found, and the number of technical reports cited and their country of origin and intergovernmental issuing organization. Selected databases were also searched to determine the presence of GL during those same years. The paper presents the first results obtained.     

国内生物医学文献服务系统比较研究

文章通过对国内医知网和三共网这两种不同运行模式的生物医学文献服务系统的比较分析,指出各自检索功能与服务功能的优势与不足,提出从优化检索功能、完善服务功能、妥善解决版权问题、注重社会责任等方面完善我国生物医学文献服务系统,以期为用户提供更全面的生物医学文献支撑。     

The SUNY biomedical communication network: six years of progress in on-line bibiographic retrieval.

The SUNY Biomedical Communication Network became operational in 1968 as the first on-line bibliograhpic retrieval service for biomedical literature. Since 1968, the SUNY/BCN has grown in size from nine to thirty-two medical and university libraries and has expanded its data base coverage to include the ERIC and Psychological Abstracts data bases in addition to the full ten-year retrospective MEDLARS data base. Aside from the continuous provision of an on-line searching system, the SUNY experience over the last six years has yielded valuable information in the following areas of: (1) monograph indexing and retrieval, (2) shared cataloging, (3) user interaction and education in on-line systems, and (4) member participation in Network policy-making processes. The continued success of the SUNY/BCN is evidence that it is possible to provide a high quality on-line bibliographic retrieval system at cost to academic institutions. SUNY's success in this effort is the result of centralized resource sharing and effective regional networking, combined with thoughtful planning by user advisory committees.     

Epilepsy Abstracts Retrieval System (EARS): a new concept for medical literature storage and retrieval

Epilepsy Abstracts, a monthly publication of the National Institute of Neurological Diseases and Stroke, is used as the data base for an on-line full-text search and retrieval system. Every word in the abstract (except common words that possess no retrieval value) becomes a keyword, reducing the mismatch between the user's familiarity with word usage in the desired subject area and the word usage in the documents to be searched.     

The effectiveness of the practice of correction and republication in the biomedical literature

Objective:

This research measures the effectiveness of the practice of correction and republication of invalidated articles in the biomedical literature by analyzing the rate of citation of the flawed and corrected versions of scholarly articles over time. If the practice of correction and republication is effective, then the incidence of citation of flawed versions should diminish over time and increased incidence of citation of the republication should be observed.

Methods:

This is a bibliometric study using citation analysis and statistical analysis of pairs of flawed and corrected articles in MEDLINE and Web of Science.

Results:

The difference between citation levels of flawed originals and corrected republications does not approach statistical significance until eight to twelve years post-republication. Results showed substantial variability among bibliographic sources in their provision of authoritative bibliographic information.

Conclusions:

Correction and republication is a marginally effective biblioremediative practice. The data suggest that inappropriate citation behavior may be partly attributable to author ignorance.

Highlights

• The citation of flawed articles occurs at a rate nearly equal to that of corrected versions.
• The practice of correction and republication is only marginally effective and does not prevent the continued citation of flawed articles post-correction, with the analysis finding only a slight reduction in the citation of flawed articles after publication of the corrected version.
• Neither MEDLINE nor Web of Science consistently alert users when dealing with corrected and republished literature.

Implications

• The practice of correction and republication would be more effective if prominent sources of bibliographic information were more consistent in providing users with information about the status of corrected and republished articles and the existence of post-publication modifications to the literature.
• It is incumbent upon the scientific community to raise the profile of post-publication changes to the literature to prevent the wasteful and potentially tragic consequences of scientists and medical professionals applying flawed information. Failure to do so will surely result in a reduction of public trust in the reliability of the scientific literature and its users.

     

Charging for library and information services in medical libraries: a review of the literature and a survey of current practice*

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文献检索课案例教学的失效性分析

案例教学在文献检索课中发挥了重要作用,然而随着第三代搜索引擎自然语言处理技术的成熟和数据库智能化检索的趋势,一些教学案例存在一定的失效性现象。文章列举了这种现象,并分析了原因,旨在对文检课教学提出一些改进的想法和建议。